Miao, Yinglong : rechercher sur Z-Library

Le plus grand référentiel d'articles scientifiques au monde. 70,000,000+ d'articles gratuitement.

Don't use scam websites

Livres
Articles (79)
Les plus populaires
Liste
- Liste
- Tableau

1

Deciphering Off-Target Effects in CRISPR-Cas9 through Accelerated Molecular Dynamics

Ricci, Clarisse G., Chen, Janice S., Miao, Yinglong, Jinek, Martin, Doudna, Jennifer A., McCammon, J. Andrew, Palermo, Giulia

Journal:

ACS Central Science

Année:

2019

Langue:

english

Fichier:

PDF, 6.41 MB

english, 2019

2

Derivation of Mean-Square Displacements for Protein Dynamics from Elastic Incoherent Neutron Scattering

Yi, Zheng, Miao, Yinglong, Baudry, Jerome, Jain, Nitin, Smith, Jeremy C.

Journal:

Journal of Physical Chemistry B

Année:

2012

Langue:

english

Fichier:

PDF, 3.56 MB

english, 2012

3

General trends of dihedral conformational transitions in a globular protein

Miao, Yinglong, Baudry, Jerome, Smith, Jeremy C., McCammon, J. Andrew

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 854 KB

english, 2016

4

Gaussian accelerated molecular dynamics for elucidation of drug pathways

Bhattarai, Apurba, Miao, Yinglong

Journal:

Expert Opinion on Drug Discovery

Année:

2018

Langue:

english

Fichier:

PDF, 2.09 MB

english, 2018

5

Viral structural transition mechanisms revealed by multiscale molecular dynamics/order parameter extrapolation simulation

Yinglong Miao, Peter J. Ortoleva

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 851 KB

english, 2010

6

Molecular dynamics/order parameter extrapolation for bionanosystem simulations

Yinglong Miao, Peter J. Ortoleva

Journal:

Journal of Computational Chemistry

Année:

2009

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2009

7

Coupled Flexibility Change in Cytochrome P450cam Substrate Binding Determined by Neutron Scattering, NMR, and Molecular Dynamics Simulation

Miao, Yinglong, Yi, Zheng, Cantrell, Carey, Glass, Dennis C., Baudry, Jerome, Jain, Nitin, Smith, Jeremy C.

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2012

8

All-Atom Multiscale Simulation of Cowpea Chlorotic Mottle Virus Capsid Swelling

Miao, Yinglong, Johnson, John E., Ortoleva, Peter J.

Journal:

Journal of Physical Chemistry B

Année:

2010

Langue:

english

Fichier:

PDF, 800 KB

english, 2010

9

Temperature-Dependent Dynamical Transitions of Different Classes of Amino Acid Residue in a Globular Protein

Miao, Yinglong, Yi, Zheng, Glass, Dennis C., Hong, Liang, Tyagi, Madhusudan, Baudry, Jerome, Jain, Nitin, Smith, Jeremy C.

Journal:

Journal of the American Chemical Society

Année:

2012

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2012

10

Active-Site Hydration and Water Diffusion in Cytochrome P450cam: A Highly Dynamic Process

Miao, Yinglong, Baudry, Jerome

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2011

11

Active Site Hydration and Water Diffusion in Cytochrome P450Cam: A Highly Dynamic Process

Miao, Yinglong, Baudry, Jerome

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 55 KB

english, 2012

12

Population Based Reweighting of Scaled Molecular Dynamics

Sinko, William, Miao, Yinglong, de Oliveira, César Augusto F., McCammon, J. Andrew

Journal:

Journal of Physical Chemistry B

Année:

2013

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2013

13

Zaccai neutron resilience and site-specific hydration dynamics in a globular protein

Miao, Yinglong, Hong, Liang, Yi, Zheng, Smith, Jeremy C.

Journal:

The European Physical Journal E

Année:

2013

Langue:

english

Fichier:

PDF, 761 KB

english, 2013

14

Free energy landscape of G-protein coupled receptors, explored by accelerated molecular dynamics

Miao, Yinglong, Nichols, Sara E., McCammon, J. Andrew

Journal:

Physical Chemistry Chemical Physics

Année:

2014

Langue:

english

Fichier:

PDF, 2.65 MB

english, 2014

15

Dynamics Investigation of the Cytochrome P450cam Active Site Mutant Thr252ALA

Reyles, Jonathan, Miao, Yinglong, Baudry, Jerome, Smith, Jeremy C.

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 59 KB

english, 2011

16

Obituary.

Miao, Yinglong, McCammon, J. Andrew

Journal:

Année:

1867

Langue:

english

Fichier:

PDF, 400 KB

english, 1867

17

Enhanced Conformational Sampling of M2 Muscarinic Acetylcholine Receptor for Designing Selective Allosteric Drugs

Miao, Yinglong, McCammon, J. Andrew

Journal:

Biophysical Journal

Année:

2013

Langue:

english

Fichier:

PDF, 42 KB

english, 2013

18

Activation of the M2 Muscarinic Receptor and Computer-Aided Design of Receptor-Selective Allosteric Drugs

Miao, Yinglong, McCammon, J. Andrew

Journal:

Biophysical Journal

Année:

2014

Langue:

english

Fichier:

PDF, 45 KB

english, 2014

19

Temperature Dependent Dynamics of Cytochrome P450cam from Elastic Incoherent Neutron Scattering

Yi, Zheng, Miao, Yinglong, Baudry, Jerome, Jain, Nitin, Smith, Jeremy C.

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 39 KB

english, 2012

20

Improved Reweighting of Accelerated Molecular Dynamics Simulations for Free Energy Calculation

Miao, Yinglong, Sinko, William, Pierce, Levi, Bucher, Denis, Walker, Ross C., McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Année:

2014

Langue:

english

Fichier:

PDF, 6.16 MB

english, 2014

21

Space Warping Order Parameters and Symmetry: Application to Multiscale Simulation of Macromolecular Assemblies

Singharoy, Abhishek, Joshi, Harshad, Miao, Yinglong, Ortoleva, Peter J.

Journal:

Journal of Physical Chemistry B

Année:

2012

Langue:

english

Fichier:

PDF, 3.91 MB

english, 2012

22

Mapping of Allosteric Druggable Sites in Activation-Associated Conformers of the M2 Muscarinic Receptor

Miao, Yinglong, Nichols, Sara E., McCammon, J. Andrew

Journal:

Chemical Biology & Drug Design

Année:

2014

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2014

23

Nitric oxide enhances extracellular ATP induced Ca2+ oscillation in HeLa cells

Tang, Yinglong, Yin, Yin, Miao, Lin, Wei, Bin, Zhai, Kui, Ji, Guangju

Journal:

Archives of Biochemistry and Biophysics

Année:

2015

Langue:

english

Fichier:

PDF, 1.79 MB

english, 2015

24

TRANSPORT PROPERTY OF TWO ISOELECTRONIC MOLECULES

HUANG, JING, LI, QUNXIANG, WU, XIAOJUN, MIAO, YINGLONG, YANG, JINLONG

Journal:

International Journal of Nanoscience

Année:

2006

Langue:

english

Fichier:

PDF, 521 KB

english, 2006

25

Multi-Conformer Ensemble Docking to Difficult Protein Targets

Ellingson, Sally R., Miao, Yinglong, Baudry, Jerome, Smith, Jeremy C.

Journal:

Journal of Physical Chemistry B

Année:

2015

Langue:

english

Fichier:

PDF, 1.96 MB

english, 2015

26

Allosteric Effects of Sodium Ion Binding on Activation of the M3 Muscarinic G-Protein-Coupled Receptor

Miao, Yinglong, Caliman, Alisha D., McCammon, J. Andrew

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 3.56 MB

english, 2015

27

Gaussian Accelerated Molecular Dynamics: Unconstrained Enhanced Sampling and Free Energy Calculation

Miao, Yinglong, Feher, Victoria A., McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Année:

2015

Langue:

english

Fichier:

PDF, 1.99 MB

english, 2015

28

Viral structural transitions: An all-atom multiscale theory

Miao, Yinglong, Ortoleva, Peter J.

Journal:

The Journal of Chemical Physics

Année:

2006

Langue:

english

Fichier:

PDF, 735 KB

english, 2006

29

All-atom multiscaling and new ensembles for dynamical nanoparticles

Miao, Yinglong, Ortoleva, Peter

Journal:

The Journal of Chemical Physics

Année:

2006

Langue:

english

Fichier:

PDF, 122 KB

english, 2006

30

Accelerated Molecular Dynamics Simulations of Protein Folding

Miao, Yinglong, Feixas, Ferran, Eun, Changsun, McCammon, J. Andrew

Journal:

Journal of Computational Chemistry

Année:

2016

Fichier:

PDF, 55 KB

2016

31

Accelerated molecular dynamics simulations of ligand binding to a muscarinic G-protein-coupled receptor

Kappel, Kalli, Miao, Yinglong, McCammon, J. Andrew

Journal:

Quarterly Reviews of Biophysics

Année:

2015

Langue:

english

Fichier:

PDF, 793 KB

english, 2015

32

Activation and Drug Design of a Muscarinic G-Protein Coupled Receptor

Miao, Yinglong, McCammon, J. Andrew

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 42 KB

english, 2015

33

Activation of a Muscarinic G-Protein Coupled Receptor and Structure-Based Design of Allosteric Modulators

Miao, Yinglong, McCammon, J. Andrew

Journal:

Biophysical Journal

Année:

2016

Langue:

english

Fichier:

PDF, 59 KB

english, 2016

34

Quasielastic Neutron Scattering in Biology: Theory and Applications

Vural, Derya, Hu, Xiaohu, Lindner, Benjamin, Jain, Nitin, Miao, Yinglong, Cheng, Xiaolin, Liu, Zhuo, Hong, Liang, Smith, Jeremy C.

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Année:

2016

Langue:

english

Fichier:

PDF, 2.08 MB

english, 2016

35

Molecular dynamic study of MlaC protein in Gram-negative bacteria: conformational flexibility, solvent effect and protein-phospholipid binding

Huang, Yu-ming M., Miao, Yinglong, Munguia, Jason, Lin, Leo, Nizet, Victor, McCammon, J. Andrew

Journal:

Protein Science

Année:

2016

Langue:

english

Fichier:

PDF, 4.77 MB

english, 2016

36

Accelerated molecular dynamics simulations of protein folding

Miao, Yinglong, Feixas, Ferran, Eun, Changsun, McCammon, J. Andrew

Journal:

Journal of Computational Chemistry

Année:

2015

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2015

37

Investigation of the conformational dynamics of the apo A 2A adenosine receptor

Caliman, Alisha D., Swift, Sara E., Wang, Yi, Miao, Yinglong, McCammon, J. Andrew

Journal:

Protein Science

Année:

2015

Langue:

english

Fichier:

PDF, 662 KB

english, 2015

38

G-protein coupled receptors: advances in simulation and drug discovery

Miao, Yinglong, McCammon, J Andrew

Journal:

Current Opinion in Structural Biology

Année:

2016

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2016

39

Unconstrained enhanced sampling for free energy calculations of biomolecules: a review

Miao, Yinglong, McCammon, J. Andrew

Journal:

Molecular Simulation

Année:

2016

Langue:

english

Fichier:

PDF, 1.49 MB

english, 2016

40

Accelerated structure-based design of chemically diverse allosteric modulators of a muscarinic G protein-coupled receptor

Miao, Yinglong, Goldfeld, Dahlia Anne, Moo, Ee Von, Sexton, Patrick M., Christopoulos, Arthur, McCammon, J. Andrew, Valant, Celine

Journal:

Proceedings of the National Academy of Sciences

Année:

2016

Langue:

english

Fichier:

PDF, 1.97 MB

english, 2016

41

Striking Plasticity of CRISPR-Cas9 and Key Role of Non-target DNA, as Revealed by Molecular Simulations

Palermo, Giulia, Miao, Yinglong, Walker, Ross C., Jinek, Martin, McCammon, J. Andrew

Journal:

ACS Central Science

Année:

2016

Langue:

english

Fichier:

PDF, 4.69 MB

english, 2016

42

Ligand Binding in the Extracellular Vestibule of the Neurotransmitter Transporter Homologue LeuT

Grouleff, Julie, Koldsø, Heidi, Miao, Yinglong, Schiøtt, Birgit

Journal:

ACS Chemical Neuroscience

Année:

2017

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2017

43

Gaussian Accelerated Molecular Dynamics in NAMD

Pang, Yui Tik, Miao, Yinglong, Wang, Yi, McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Année:

2017

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2017

44

Reactive Center Loop Insertion in α-1-Antitrypsin Captured by Accelerated Molecular Dynamics Simulation

Andersen, Ole Juul, Risør, Michael Wulff, Poulsen, Emil Christian, Nielsen, Niels Chr., Miao, Yinglong, Enghild, Jan J., Schiøtt, Birgit

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.03 MB

english, 2017

45

CRISPR-Cas9: Computational Insights Toward Improved Genome Editing

Palermo, Giulia, Miao, Yinglong, Walker, Ross C., Jinek, Martin, McCammon, J. Andrew

Journal:

Biophysical Journal

Année:

2017

Langue:

english

Fichier:

PDF, 40 KB

english, 2017

46

Enhanced Simulations and Drug Discovery of a Muscarinic G-Protein-Coupled Receptor

Miao, Yinglong, McCammon, J. Andrew

Journal:

Biophysical Journal

Année:

2017

Langue:

english

Fichier:

PDF, 64 KB

english, 2017

47

Activation mechanisms of the first sphingosine-1-phosphate receptor

Caliman, Alisha D., Miao, Yinglong, McCammon, J. Andrew

Journal:

Protein Science

Année:

2017

Langue:

english

Fichier:

PDF, 17.78 MB

english, 2017

48

Hybrid finite element and Brownian dynamics method for charged particles

Huber, Gary A., Miao, Yinglong, Zhou, Shenggao, Li, Bo, McCammon, J. Andrew

Journal:

The Journal of Chemical Physics

Année:

2016

Langue:

english

Fichier:

PDF, 491 KB

english, 2016

49

CRISPR-Cas9 conformational activation as elucidated from enhanced molecular simulations

Palermo, Giulia, Miao, Yinglong, Walker, Ross C., Jinek, Martin, McCammon, J. Andrew

Journal:

Proceedings of the National Academy of Sciences

Année:

2017

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2017

50

Mapping the Allosteric Sites of the A 2A Adenosine Receptor

Caliman, Alisha D., Miao, Yinglong, McCammon, J. Andrew

Journal:

Chemical Biology & Drug Design

Année:

2017

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2017